Tags: Document - information retrieval

UMLS Visualizer

This is a link to a java based UMLS visualizer. Your comments are most welcome.  It takes 30-60 seconds to load when first invoked.  Instructions:  Select the databases to search on the right. Type in a particular term at the bottom and press return.  Th ...

The Arrowsmith Project Home Page

 Arrowsmith Two Node Search tool,  Anne O'Tate value-added PubMed search tool,  Author-ity Author Name Disambiguation tools, ADAM abbreviation database,    WETLAB prototype electronic lab notebook,   Compendium of Biomedical Text Mining tools,   ...

Surveyor is a ruby gem and developer tool that enables data gathering in Rails applications. Surveys are written in the Surveyor DSL (Domain  Specific Language).

What is SOCR? The Statistics Online Computational Resource (SOCR) designs, validates and freely disseminates knowledge. Specifically, SOCR provides portable online aids for probability and statistics education, technology based instruction and statistica ...

The Resource Discovery System (RDS) is a system for discovering research resources.  RDS has many partnerning institutions which to date include the Clinical and Translational Science Award (CTSA) sites, the National Centers for Biomedical Computing Excel ...

Category Bioinformatics

QuExT (Query Expansion Tool) is a webserver designed to aid researchers working with large datasets find relationships between genes. It works through expanding each gene name into several associated terms, such as protein products of gene translation, me ...

PubMed-EX is a browser extension that marks up PubMed search results with additional information retrieved from IASL & IISR text-mining services. PubMed-EX's page mark-up includes section categorization, gene/disease name, and relation. The mark-ups o ...

Neuroscience Information Framework (NIF)

Informatics and new web technologies (e.g. ontologies, social networking and community wikis) are becoming increasingly important to biomedical researchers. The sharing of research data and information pertaining to resources (i.e. tools, data, materials ...

Category Annotation

This package provides machine learning algorithms optimized for large text categorization tasks and is able to combine several text categorization solutions. The advantages of this package compared to existing approaches are: 1) its speed, 2) it is able t ...

This annotator encodes MetaMap named entities in a format utilizable by UIMA components. The annotator is based on the MetaMap UIMA Wrapper (http://sourceforge.net/projects/metamap-uima/) authored by Kai Schlamp. Please Note: The MetaMap UIMA Annotator r ...

MetaMap maps terms occurring in text to UMLS Metathesaurus concepts. As part of this mapping process, MetaMap tokenizes text into sentences, phrases, and words. MetaMap maps the noun phrases of the text to the best matching UMLS concept or set of concepts ...

MetaMap is a highly configurable application developed by the Lister Hill National Center for Biomedical Communications at the National Library of Medicine (NLM) to map biomedical text to the UMLS Metathesaurus or, equivalently, to identify Metathesaurus ...

MedlinePlus Connect allows patient portals and electronic health record (EHR) systems to use existing code sets to link to relevant, authoritative patient health information from MedlinePlus.gov. Matches ICD-9-CM or SNOMED CT CORE Problem List Subset code ...

The Medical Text Indexer (MTI) system was developed as part of the U. S. National Library of Medicine’s (NLM) Indexing Initiative. MTI produces both semi- and fully-automated indexing recommendations based on the Medical Subject Headings (MeSH®) controlle ...

The LONI Pipeline is a visual language  programming environment  for study designs and data provenance based on complex graphical  workflows. The construction, validation and dissemination of study designs via the  LONI Pipeline uses advanced neuroimaging ...

Category Bioinformatics
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LingPipe Text Analytics Java API

LingPipe is tool kit for processing text using computational linguistics. LingPipe is used to do tasks like: Find the names of people, organizations or locations in news Automatically classify Twitter search results into categories Suggest correct sp ...

Category Sectionizer

Pentaho Data Integration, codenamed Kettle, consists of a core data integration engine, and GUI applications that allow the user to define data integration jobs and transformations. It supports deployment on single node computers as well as on a cloud, or ...

Health Ontology Mapper (HOM)

The CTSA Health Ontology Mapper (HOM) is an open source general purpose instance mapper running as an i2b2 cell designed for academic research and hospital environments. It can convert locally obtained data (which may not be encoded using any nationally r ...

GeneBrowser

 GeneBrowser is a web-based tool that, for a given list of genes, combines data from several public databases with visualisation and analysis methods to help identify the most relevant and common biological characteristics. The functionalities provided in ...

Category Gene Expression
Distributome

The Distributome Project is an open-source, open content-development project for exploring, discovering, learning, and computational utilization of diverse probability distributions. Probability distributions are a special class of functions defined in te ...

Category Bioinformatics