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ToppGene Suite is a one-stop portal for (i) gene list functional enrichment, (ii) candidate gene prioritization using either functional annotations or network analysis and (iii) identification and prioritization of novel disease candidate genes in the int ...

What is SOCR? The Statistics Online Computational Resource (SOCR) designs, validates and freely disseminates knowledge. Specifically, SOCR provides portable online aids for probability and statistics education, technology based instruction and statistica ...

The Resource Discovery System (RDS) is a system for discovering research resources.  RDS has many partnerning institutions which to date include the Clinical and Translational Science Award (CTSA) sites, the National Centers for Biomedical Computing Excel ...

Category Bioinformatics

PMC Parser can be used to parse PMC open access articles' XML files. Create an object of PmcArticle and call various methods to obtain relevant data.

Category Other
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Health Ontology Mapper (HOM)

The CTSA Health Ontology Mapper (HOM) is an open source general purpose instance mapper running as an i2b2 cell designed for academic research and hospital environments. It can convert locally obtained data (which may not be encoded using any nationally r ...

Distributome

The Distributome Project is an open-source, open content-development project for exploring, discovering, learning, and computational utilization of diverse probability distributions. Probability distributions are a special class of functions defined in te ...

Category Bioinformatics

BioSimplify is an open source tool written in Java that introduces and facilitates the use of a novel model for sentence simplification tuned for automatic discourse analysis and information extraction (as opposed to sentence simplification for improving ...