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Ali Baba parses PubMed abstracts for biological objects and their relations as discussed in the texts. Ali Baba visualizes the resulting network in graphical form, thus presenting a quick overview over all information contained in the abstracts. You can ...

Health Ontology Mapper (HOM)

The CTSA Health Ontology Mapper (HOM) is an open source general purpose instance mapper running as an i2b2 cell designed for academic research and hospital environments. It can convert locally obtained data (which may not be encoded using any nationally r ...

Pentaho Data Integration, codenamed Kettle, consists of a core data integration engine, and GUI applications that allow the user to define data integration jobs and transformations. It supports deployment on single node computers as well as on a cloud, or ...

MedlinePlus Connect allows patient portals and electronic health record (EHR) systems to use existing code sets to link to relevant, authoritative patient health information from MedlinePlus.gov. Matches ICD-9-CM or SNOMED CT CORE Problem List Subset code ...

QuExT (Query Expansion Tool) is a webserver designed to aid researchers working with large datasets find relationships between genes. It works through expanding each gene name into several associated terms, such as protein products of gene translation, me ...

Surveyor is a ruby gem and developer tool that enables data gathering in Rails applications. Surveys are written in the Surveyor DSL (Domain  Specific Language).