The purpose of NLM's Unified Medical Language System® (UMLS) is to facilitate the development of computer systems that behave as if they "understand" the meaning of the language of biomedicine and health. To that end, NLM produces and distributes the UMLS ...

This package consists of Perl modules along with supporting Perl programs that implement the semantic similarity and relatedness measures described by Leacock & Chodorow (1998), Wu & Palmer (1994), Nguyen and Al-Mubaid (2006), Rada, et. al. 1989, ...

This package provides a Perl interface to the Unified Medical Language System (UMLS). The UMLS is a knowledge representation framework encoded designed to support broad scope biomedical research queries. There exists three major sources in the UMLS. The M ...

U-Compare is an integrated text mining/natural language processing system based on the UIMA Framework, which provides access to a large collection of ready-to-use interoperable natural language processing components, currently the world's largest UIMA com ...

The Arrowsmith Project Home Page

 Arrowsmith Two Node Search tool,  Anne O'Tate value-added PubMed search tool,  Author-ity Author Name Disambiguation tools, ADAM abbreviation database,    WETLAB prototype electronic lab notebook,   Compendium of Biomedical Text Mining tools,   ...

SenseClusters is a suite of Perl programs that supports unsupervised clustering of similar contexts. It relies on it's own native methodology, and also provides support for Latent Semantic Analysis. SenseClusters is a complete system that takes users from ...

RapTAT - A Rapid Text Annotation Tool

RapTAT is a Java-based tool designed to identify and optimize machine-learning methods for accelerating and/or automating free-text annotation. In the initial version of the tool, the user will train the machine-learning system by loading it with document ...

PubMed-EX is a browser extension that marks up PubMed search results with additional information retrieved from IASL & IISR text-mining services. PubMed-EX's page mark-up includes section categorization, gene/disease name, and relation. The mark-ups o ...

This annotator encodes MetaMap named entities in a format utilizable by UIMA components. The annotator is based on the MetaMap UIMA Wrapper (http://sourceforge.net/projects/metamap-uima/) authored by Kai Schlamp. Please Note: The MetaMap UIMA Annotator r ...

MetaMap, from the National Library of Medicine (NLM), maps biomedical text to the UMLS Metathesaurus and allows Metathesaurus concepts to be discovered in a text corpus. The Tagger_MetaMap plugin for GATE wraps the MetaMap Java API client to allow GATE ...

MetaMap maps terms occurring in text to UMLS Metathesaurus concepts. As part of this mapping process, MetaMap tokenizes text into sentences, phrases, and words. MetaMap maps the noun phrases of the text to the best matching UMLS concept or set of concepts ...

MetaCoDe is currently being developped. It is another UMLS concepts extractor implemented as a GATE plugin. The purpose is to provide tagging tools available for languages other than English, the ongoing efforts being on French.

The Medical Text Indexer (MTI) system was developed as part of the U. S. National Library of Medicine’s (NLM) Indexing Initiative. MTI produces both semi- and fully-automated indexing recommendations based on the Medical Subject Headings (MeSH®) controlle ...

Lancet

 Lancet is a supervised machine-learning system that automatically extracts medication events consisting of medication names and information pertaining to their prescribed use (dosage, mode, frequency, duration and reason) from lists or narrative text in ...

By combining a selection of our software services Kleio can provide enhanced results through a process that identifies key entities within the text, such as gene names or proteins, and improves the querying method with unique identifiers by automatically ...

Integrated cTAKES (icTAKES) is an integrated version of Mayo clinical Text Analysis and Knowledge Extraction System. We reorganized from original cTAKES to fully take advantage of the UIMA framework and allow end users and developers to set up clinical na ...

This virtual machine is built using VirtualBox and contains the following clinical NLP applications: 1) eHOST - an annotation tool 2) CTAKES - a clinical information extraction tool 3) ARC - automated retrieval console for creating document classifiers ...

A prototype annotation system that provides an open-source stand-alone client for manual annotation of clinical texts. The eHOST annotation tool has been used by several institutions and projects for a variety of tasks, including both the 2010 and 2011 i ...

Work in progress of Dr. Jonnalagadda's K99/R00 project at Mayo Clinic and Northwestern University: The use of clinical knowledge systems such as UpToDate that provide reliable information at the point of care has been shown to improve patient safety and ...