BADREX: Biomedical Abbreviation Expander with Dynamic Regular Expressions

github.com/philgooch/BADREX-Biomedical-Abbreviation-Expander

BADREX uses dynamically generated regular expressions to annotate term definition–term abbreviation pairs, and corefers unpaired acronyms and abbreviations back to their initial (or most recent) definition in the text. BADREX achieves precision and recall ...

sites.google.com/site/fmchowdhury2/bioenex

BioEnEx is a tool designed to annotate multiple biomedical entity types (i.e. genes/proteins, diseases, species, chemicals, etc) with high performance. It uses a first order CRF classifier. Separate feature sets are used for diseases and genes/proteins. F ...

BioSimplify Popular

sourceforge.net/projects/biosimplify/

BioSimplify is an open source tool written in Java that introduces and facilitates the use of a novel model for sentence simplification tuned for automatic discourse analysis and information extraction (as opposed to sentence simplification for improving ...

brat rapid annotation tool (brat)

brat.nlplab.org

brat rapid annotation tool, is a free, open-source, web-based tool for text annotation visualisation and editing. brat is fully configurable and can support a wide variety of annotation tasks, including, for example: * entity mention ("named entity") an ...

Category:Annotation