ABNER Popular

ABNER

pages.cs.wisc.edu/~bsettles/abner/

ABNER is a software tool for molecular biology text analysis. It began as a user-friendly interface for a system developed as part of the NLPBA/BioNLP 2004 Shared Task challenge. The details of that system are described in the paper below (Settles, 2004). ...

CliNER Popular

CliNER

text-machine.cs.uml.edu/cliner

Open-source natural language processing system for named entity recognition in clinical text of electronic health records. CliNER will identify clinically-relevant entities mentioned in a clinical narrative (such as diseases/disorders, signs/symptoms, med ...

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SemRep Popular

SemRep is a program that extracts semantic predications (subject-predicate-object triples) from biomedical free text. Elements of a semantic predications are drawn from the UMLS knowledge sources; the subject and object pair corresponds to UMLS Metathesau ...

mist-deid.sourceforge.net

The MITRE Identification Scrubber Toolkit (MIST) is a suite of tools for identifying and redacting personally identifiable information (PII) in free-text medical records. MIST helps you replace these PII either with obscuring fillers, such as [NAME], or w ...

UMLS Visualizer Popular

UMLS Visualizer

www.cincinnatichildrens.org/research/divisions/b/bmi/labs/pe...

This is a link to a java based UMLS visualizer. Your comments are most welcome.  It takes 30-60 seconds to load when first invoked.  Instructions:  Select the databases to search on the right. Type in a particular term at the bottom and press return.  Th ...