The Online Registry of Biomedical Informatics Tools (ORBIT) Project is a community-wide effort to create and maintain a structured, searchable metadata registry for informatics software, knowledge bases, data sets and design resources. This site is not a repository for the resources; it is a registry that provides links to the resources as submitted by the authors. To submit a resource, please login or register. Login is not required to search the repository.

 

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  • CLAMP - Clinical Language Annotation, Modeling and Processing toolkitCategory: SoftwareCreated: 6 Feb 2018Name: CLAMP - Clinical Language Annotation, Modeling and Proc...Description: CLAMP is a comprehensive clinical Natural Language Processing (NLP) software that enables recognition and automatic encoding of clinical information in narrative patient reports. It provides not only state-of-the-art NLP components but also a user-friendl ...
  • CliNERCategory: Named Entity RecognitionCreated: 12 Feb 2015Name: CliNERDescription: Open-source natural language processing system for named entity recognition in clinical text of electronic health records. CliNER will identify clinically-relevant entities mentioned in a clinical narrative (such as diseases/disorders, signs/symptoms, med ...
  • NDF-RT APICategory: BioinformaticsCreated: 29 Oct 2014Name: NDF-RT APIDescription: The NDF-RT API is a web service for accessing the current National Drug File - Reference Terminology (NDF-RT) data set from your program via SOAP/WSDL or through a RESTful interface.  The NDF-RT RESTful web API is a simple web service implemented using HT ...
  • RxNorm APICategory: BioinformaticsCreated: 29 Oct 2014Name: RxNorm APIDescription: The RxNorm API is a web service for accessing the current RxNorm data set from your program. Clients can access the web service via SOAP/WSDL or through a RESTful interface. RxNorm provides normalized names for clinical drugs and links its names to many o ...
  • RxNavCategory: BioinformaticsCreated: 29 Oct 2014Name: RxNavDescription: RxNav is a browser for several drug information sources, including RxNorm, RxTerms and NDF-RT. RxNav finds drugs in RxNorm from the names and codes in its constituent vocabularies. RxNav displays links from clinical drugs, both branded and generic, to the ...
  • MetaCoDeCategory: NLP / Information ExtractionCreated: 29 Oct 2014Name: MetaCoDeDescription: MetaCoDe is currently being developped. It is another UMLS concepts extractor implemented as a GATE plugin. The purpose is to provide tagging tools available for languages other than English, the ongoing efforts being on French.
  • RxNormCategory: Structured DataCreated: 29 Oct 2014Name: RxNormDescription: RxNorm, a standardized nomenclature for clinical drugs and drug delivery devices, is produced by the National Library of Medicine (NLM). In this context, a clinical drug is a pharmaceutical product given to (or taken by) a patient with a therapeutic or di ...
  • MedlinePlus ConnectCategory: Document/Information RetrievalCreated: 29 Oct 2014Name: MedlinePlus ConnectDescription: MedlinePlus Connect allows patient portals and electronic health record (EHR) systems to use existing code sets to link to relevant, authoritative patient health information from MedlinePlus.gov. Matches ICD-9-CM or SNOMED CT CORE Problem List Subset code ...
  • NCBI E-UtilitiesCategory: BioinformaticsCreated: 29 Oct 2014Name: NCBI E-UtilitiesDescription: The Entrez Programming Utilities (E-utilities) are a set of eight server-side programs that provide a stable interface into the Entrez query and database system at the National Center for Biotechnology Information (NCBI). The E-utilities use a fixed URL s ...
  • GENIA CorpusCategory: Human AnnotatedCreated: 27 Oct 2014Name: GENIA CorpusDescription: Corpus annotation is now a key topic for all areas of natural language processing (NLP) and information extraction (IE) which employ supervised learning. With the explosion of results in molecular-biology there is an increased need for IE to extract knowl ...
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